miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|34350293|gb|CF391876.1|CF391876 TCAATAATGGGTGTGATGGCAGAGGAGCCCTTGTTGGTAGAGAATCCCCAGAGGTTTTGTATGTTTCCCATTAAGTACCC
TGAAATCTGGGAAATGTACAAGAAAGCTGAAGCTAGCTTCTGGACTGCGGAGGAAGTTGATCTCTCTGAGGATACCCAGC
ATTGGGAGGCATTGACTGGTGATGAGAAGCACTTTATCACTCACGTCCTTGCATTCTTTGCTGCCTCTGACGGCATTGTT
CTCGAAAACTTGGCTGGGCGTTTCATGAAAGAGGTTCAAGTTCCAGAGGTGTGCATACGTTTTTCTATACATTCCTCTTT
TCTTTATTTCTGTTATTTCTTTTCGTTTTCTTTTCCTTTTTACAGTTCTTTAAAACAAGAATAAGAGAATGGAACTCCTG
CAACATTTTTGCCCTGGCGTTTCTTAGGCAATCAATGGGCTGAAATTTGAATATGGGGTGGTTGTGATAGATTGAATATC
TAGTTGCTCGATGGCAGCTGAACTGACTTTCATACATTCCTATTTGTTCTTAAACTCTGCGCGGTGGTTAGAACAAGTGT
TTTGTGTTATTGATGTGTACAACTCGCGGTTTCTTTCAGGCTCGTGCATTTTATGGGTTCCAGATTGCCATTGAGAATAT
TCACTCAGGTACTATTTGAAAAAATGAAGGGGTTTCTTTTCTTCCCCTCTACCAATTTCATGACTGAAGTTACAGCATTC
TTCATGGTGTTGGCCCCTTCCCCTTTTGCAGAGATGTACAGTTTACTGTTGGAGACATATGTCAA




Most similar to sp|P49730|RIR2_TOBAC

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P49730|RIR2_TOBAC Ribonucleoside-diphosphate reductase small
           chain OS=Nicotiana tabacum PE=2 SV=1
          Length = 329

 Score =  162 bits (409), Expect = 3e-39
 Identities = 76/94 (80%), Positives = 83/94 (88%)
 Frame = +1

Query: 7   MGVMAEEPLLVENPQRFCMFPIKYPEIWEMYKKAEASFWTAEEVDLSEDTQHWEALTGDE 186
           M ++ EEPLL  +P RFCMFPI+YP+IWEMYKKA ASFWTAEEVDLS DT+HWE LT  E
Sbjct: 1   MPLIPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGE 60

Query: 187 KHFITHVLAFFAASDGIVLENLAGRFMKEVQVPE 288
           +HFITHVLAFFAASDGIVLENLAGRFMKEVQV E
Sbjct: 61  RHFITHVLAFFAASDGIVLENLAGRFMKEVQVAE 94